Detailed information of SNP:
|
SNP ID:
sf0307365873(Gbrowse)
Chromosome: chr03 Position: 7365873 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.30% | 34.70% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307365873 | T->A | LOC_Os03g13614(LOC_Os03g13614.2) | INTRON |
| sf0307365873 | T->A | LOC_Os03g13614(LOC_Os03g13614.3) | INTRON |
| sf0307365873 | T->A | LOC_Os03g13614(LOC_Os03g13614.1) | INTRON |