Detailed information of SNP:
|
SNP ID:
sf0307372112(Gbrowse)
Chromosome: chr03 Position: 7372112 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 62.65% | 37.35% |
| All Indica | 774 | 96.12% | 3.88% |
| All Japonica | 495 | 4.24% | 95.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 95.88% | 4.12% |
| Indica II | 206 | 97.57% | 2.43% |
| Indica Intermediate | 204 | 95.10% | 4.90% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307372112 | G->T | INTERGENIC | None |