Detailed information of SNP:
|
SNP ID:
sf0307385963(Gbrowse)
Chromosome: chr03 Position: 7385963 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 68.74% | 31.26% |
| All Indica | 794 | 98.99% | 1.01% |
| All Japonica | 497 | 15.49% | 84.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307385963 | T->A | INTERGENIC | None |