Detailed information of SNP:
|
SNP ID:
sf0307392255(Gbrowse)
Chromosome: chr03 Position: 7392255 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 56.69% | 43.31% |
| All Indica | 790 | 87.72% | 12.28% |
| All Japonica | 494 | 2.23% | 97.77% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 371 | 87.60% | 12.40% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 207 | 85.51% | 14.49% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 92 | 5.43% | 94.57% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307392255 | T->C | LOC_Os03g13670(LOC_Os03g13670.1) | INTRON |