Detailed information of SNP:
|
SNP ID:
sf0307400129(Gbrowse)
Chromosome: chr03 Position: 7400129 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 92.72% | 7.28% |
| All Indica | 746 | 88.61% | 11.39% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 344 | 89.53% | 10.47% |
| Indica II | 201 | 88.56% | 11.44% |
| Indica Intermediate | 201 | 87.06% | 12.94% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307400129 | C->T | INTERGENIC | None |