Detailed information of SNP:
|
SNP ID:
sf0307406631(Gbrowse)
Chromosome: chr03 Position: 7406631 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.89% | 47.11% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307406631 | G->A | INTERGENIC | None |