Detailed information of SNP:
|
SNP ID:
sf0307411288(Gbrowse)
Chromosome: chr03 Position: 7411288 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1316 | 53.12% | 46.88% |
| All Indica | 729 | 89.30% | 10.70% |
| All Japonica | 495 | 4.65% | 95.35% |
| Aus | 38 | 28.95% | 71.05% |
| Indica I | 339 | 88.20% | 11.80% |
| Indica II | 203 | 93.60% | 6.40% |
| Indica Intermediate | 187 | 86.63% | 13.37% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307411288 | A->T | LOC_Os03g13700(LOC_Os03g13700.1) | Non-Synonymous SNP |