Detailed information of SNP:
|
SNP ID:
sf0307437955(Gbrowse)
Chromosome: chr03 Position: 7437955 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1368 | 61.18% | 38.82% |
| All Indica | 792 | 97.60% | 2.40% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 32 | 53.12% | 46.88% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 208 | 97.60% | 2.40% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 8 | 87.50% | 12.50% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307437955 | G->A | INTERGENIC | None |