Detailed information of SNP:
|
SNP ID:
sf0307441913(Gbrowse)
Chromosome: chr03 Position: 7441913 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 85.98% | 14.02% |
| All Indica | 799 | 78.22% | 21.78% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 55.92% | 44.08% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307441913 | G->A | INTERGENIC | None |