Detailed information of SNP:
|
SNP ID:
sf0307486861(Gbrowse)
Chromosome: chr03 Position: 7486861 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 53.36% | 46.64% |
| All Indica | 799 | 79.22% | 20.78% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307486861 | G->A | INTERGENIC | None |