Detailed information of SNP:
|
SNP ID:
sf0307546018(Gbrowse)
Chromosome: chr03 Position: 7546018 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1250 | 85.20% | 14.80% |
| All Indica | 675 | 75.56% | 24.44% |
| All Japonica | 468 | 99.79% | 0.21% |
| Aus | 54 | 83.33% | 16.67% |
| Indica I | 312 | 83.01% | 16.99% |
| Indica II | 190 | 61.05% | 38.95% |
| Indica Intermediate | 173 | 78.03% | 21.97% |
| Temperate Japonica | 308 | 99.68% | 0.32% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307546018 | C->T | INTERGENIC | None |