Detailed information of SNP:
|
SNP ID:
sf0307588961(Gbrowse)
Chromosome: chr03 Position: 7588961 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 96.08% | 3.92% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 481 | 88.77% | 11.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 326 | 95.71% | 4.29% |
| Tropical Japonica | 89 | 75.28% | 24.72% |
| Japonica Intermediate | 66 | 72.73% | 27.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307588961 | G->A | INTERGENIC | None |