Detailed information of SNP:
|
SNP ID:
sf0307638428(Gbrowse)
Chromosome: chr03 Position: 7638428 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.41% | 33.59% |
| All Indica | 798 | 96.12% | 3.88% |
| All Japonica | 497 | 14.89% | 85.11% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307638428 | A->G | LOC_Os03g14060(LOC_Os03g14060.1) | Non-Synonymous SNP |