Detailed information of SNP:
|
SNP ID:
sf0307649172(Gbrowse)
Chromosome: chr03 Position: 7649172 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 96.84% | 3.16% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 413 | 90.31% | 9.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 284 | 97.18% | 2.82% |
| Tropical Japonica | 79 | 78.48% | 21.52% |
| Japonica Intermediate | 50 | 70.00% | 30.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307649172 | C->T | LOC_Os03g14080(LOC_Os03g14080.1) | Non-Synonymous SNP |