Detailed information of SNP:
|
SNP ID:
sf0307670763(Gbrowse)
Chromosome: chr03 Position: 7670763 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 96.39% | 3.61% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 464 | 89.44% | 10.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 305 | 86.23% | 13.77% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307670763 | T->C | LOC_Os03g14120(LOC_Os03g14120.1) | Non-Synonymous SNP |
| sf0307670763 | T->C | LOC_Os03g14120(LOC_Os03g14120.3) | Non-Synonymous SNP |
| sf0307670763 | T->C | LOC_Os03g14120(LOC_Os03g14120.2) | Non-Synonymous SNP |
| sf0307670763 | T->C | LOC_Os03g14120(LOC_Os03g14120.4) | Non-Synonymous SNP |