Detailed information of SNP:
|
SNP ID:
sf0307714723(Gbrowse)
Chromosome: chr03 Position: 7714723 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 62.24% | 37.76% |
| All Indica | 797 | 87.45% | 12.55% |
| All Japonica | 497 | 16.50% | 83.50% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 88.74% | 11.26% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 16.72% | 83.28% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307714723 | C->T | LOC_Os03g14220(LOC_Os03g14220.1) | SNPs that introduce stop codons |