Detailed information of SNP:
|
SNP ID:
sf0307716721(Gbrowse)
Chromosome: chr03 Position: 7716721 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 82.99% | 17.01% |
| All Indica | 797 | 90.84% | 9.16% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307716721 | G->A | INTERGENIC | None |