Detailed information of SNP:
|
SNP ID:
sf0307717498(Gbrowse)
Chromosome: chr03 Position: 7717498 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.96% | 18.04% |
| All Indica | 799 | 88.99% | 11.01% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307717498 | G->A | INTERGENIC | None |