Detailed information of SNP:
|
SNP ID:
sf0307748670(Gbrowse)
Chromosome: chr03 Position: 7748670 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 91.18% | 8.82% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 75.81% | 24.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 92.51% | 7.49% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307748670 | A->T | INTERGENIC | None |