Detailed information of SNP:
|
SNP ID:
sf0307761541(Gbrowse)
Chromosome: chr03 Position: 7761541 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 91.04% | 8.96% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 496 | 75.81% | 24.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307761541 | T->A | LOC_Os03g14260(LOC_Os03g14260.2) | Synonymous |
| sf0307761541 | T->A | LOC_Os03g14260(LOC_Os03g14260.1) | Synonymous |