Detailed information of SNP:
|
SNP ID:
sf0307764533(Gbrowse)
Chromosome: chr03 Position: 7764533 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 91.73% | 8.27% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 423 | 75.89% | 24.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 271 | 65.68% | 34.32% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307764533 | A->G | INTERGENIC | None |