Detailed information of SNP:
|
SNP ID:
sf0307766508(Gbrowse)
Chromosome: chr03 Position: 7766508 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1325 | 95.55% | 4.45% |
| All Indica | 710 | 91.69% | 8.31% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 335 | 88.36% | 11.64% |
| Indica II | 177 | 96.61% | 3.39% |
| Indica Intermediate | 198 | 92.93% | 7.07% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307766508 | A->G | LOC_Os03g14270(LOC_Os03g14270.1) | INTRON |