Detailed information of SNP:
|
SNP ID:
sf0307803106(Gbrowse)
Chromosome: chr03 Position: 7803106 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 66.03% | 33.97% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307803106 | C->G | INTERGENIC | None |