Detailed information of SNP:
|
SNP ID:
sf0307807298(Gbrowse)
Chromosome: chr03 Position: 7807298 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1297 | 75.25% | 24.75% |
| All Indica | 692 | 61.99% | 38.01% |
| All Japonica | 492 | 92.68% | 7.32% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 325 | 66.77% | 33.23% |
| Indica II | 188 | 52.66% | 47.34% |
| Indica Intermediate | 179 | 63.13% | 36.87% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 11 | 18.18% | 81.82% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307807298 | G->A | LOC_Os03g14349(LOC_Os03g14349.1) | Non-Synonymous SNP |