Detailed information of SNP:
|
SNP ID:
sf0307812947(Gbrowse)
Chromosome: chr03 Position: 7812947 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 78.95% | 21.05% |
| All Indica | 796 | 71.36% | 28.64% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 209 | 54.55% | 45.45% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307812947 | C->T | INTERGENIC | None |