Detailed information of SNP:
|
SNP ID:
sf0307833014(Gbrowse)
Chromosome: chr03 Position: 7833014 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 89.83% | 10.17% |
| All Indica | 797 | 90.72% | 9.28% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307833014 | A->T | INTERGENIC | None |