Detailed information of SNP:
|
SNP ID:
sf0307859007(Gbrowse)
Chromosome: chr03 Position: 7859007 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 95.01% | 4.99% |
| All Indica | 792 | 93.94% | 6.06% |
| All Japonica | 489 | 96.32% | 3.68% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 210 | 84.76% | 15.24% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 88 | 81.82% | 18.18% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307859007 | C->T | LOC_Os03g14460(LOC_Os03g14460.1) | Non-Synonymous SNP |