Detailed information of SNP:
|
SNP ID:
sf0307860732(Gbrowse)
Chromosome: chr03 Position: 7860732 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 90.24% | 9.76% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 63 | 31.75% | 68.25% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307860732 | G->A | LOC_Os03g14470(LOC_Os03g14470.1) | Non-Synonymous SNP |