Detailed information of SNP:
|
SNP ID:
sf0307861646(Gbrowse)
Chromosome: chr03 Position: 7861646 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1287 | 97.20% | 2.80% |
| All Indica | 729 | 96.98% | 3.02% |
| All Japonica | 463 | 98.70% | 1.30% |
| Aus | 44 | 88.64% | 11.36% |
| Indica I | 357 | 97.20% | 2.80% |
| Indica II | 195 | 97.44% | 2.56% |
| Indica Intermediate | 177 | 96.05% | 3.95% |
| Temperate Japonica | 308 | 99.35% | 0.65% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307861646 | C->G | INTERGENIC | None |