Detailed information of SNP:
|
SNP ID:
sf0307864711(Gbrowse)
Chromosome: chr03 Position: 7864711 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 94.45% | 5.55% |
| All Indica | 766 | 96.74% | 3.26% |
| All Japonica | 493 | 99.80% | 0.20% |
| Aus | 56 | 17.86% | 82.14% |
| Indica I | 359 | 97.49% | 2.51% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 196 | 92.35% | 7.65% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307864711 | C->T | LOC_Os03g14490(LOC_Os03g14490.1) | INTRON |