Detailed information of SNP:
|
SNP ID:
sf0307870117(Gbrowse)
Chromosome: chr03 Position: 7870117 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 87.78% | 12.22% |
| All Indica | 798 | 89.60% | 10.40% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 65 | 1.54% | 98.46% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307870117 | G->A | INTERGENIC | None |