Detailed information of SNP:
|
SNP ID:
sf0307896926(Gbrowse)
Chromosome: chr03 Position: 7896926 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 95.06% | 4.94% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307896926 | C->T | LOC_Os03g14560(LOC_Os03g14560.1) | INTRON |