Detailed information of SNP:
|
SNP ID:
sf0307899576(Gbrowse)
Chromosome: chr03 Position: 7899576 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 91.39% | 8.61% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 495 | 85.25% | 14.75% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 92 | 75.00% | 25.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307899576 | C->T | LOC_Os03g14560(LOC_Os03g14560.1) | INTRON |