Detailed information of SNP:
|
SNP ID:
sf0307903440(Gbrowse)
Chromosome: chr03 Position: 7903440 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 63.67% | 36.33% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 493 | 18.46% | 81.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 332 | 15.36% | 84.64% |
| Tropical Japonica | 93 | 35.48% | 64.52% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307903440 | T->A | INTERGENIC | None |