Detailed information of SNP:
|
SNP ID:
sf0307916123(Gbrowse)
Chromosome: chr03 Position: 7916123 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 89.90% | 10.10% |
| All Indica | 796 | 91.33% | 8.67% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307916123 | C->T | LOC_Os03g14590(LOC_Os03g14590.3) | SNPs that introduce initiation codons |
| sf0307916123 | C->T | LOC_Os03g14590(LOC_Os03g14590.1) | INTRON |
| sf0307916123 | C->T | LOC_Os03g14590(LOC_Os03g14590.2) | INTRON |