Detailed information of SNP:
|
SNP ID:
sf0307954517(Gbrowse)
Chromosome: chr03 Position: 7954517 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.39% | 13.61% |
| All Indica | 798 | 88.85% | 11.15% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307954517 | G->A | INTERGENIC | None |