Detailed information of SNP:
|
SNP ID:
sf0307966056(Gbrowse)
Chromosome: chr03 Position: 7966056 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 95.28% | 4.72% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 478 | 88.70% | 11.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 96.62% | 3.38% |
| Tropical Japonica | 88 | 59.09% | 40.91% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307966056 | C->A | INTERGENIC | None |