Detailed information of SNP:
|
SNP ID:
sf0307991329(Gbrowse)
Chromosome: chr03 Position: 7991329 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1337 | 93.27% | 6.73% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 419 | 78.76% | 21.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 297 | 72.05% | 27.95% |
| Tropical Japonica | 66 | 96.97% | 3.03% |
| Japonica Intermediate | 56 | 92.86% | 7.14% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307991329 | T->A | LOC_Os03g14700(LOC_Os03g14700.1) | INTRON |