Detailed information of SNP:
|
SNP ID:
sf0307992180(Gbrowse)
Chromosome: chr03 Position: 7992180 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 94.49% | 5.51% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 493 | 85.19% | 14.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 94.29% | 5.71% |
| Tropical Japonica | 92 | 75.00% | 25.00% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0307992180 | A->G | LOC_Os03g14700(LOC_Os03g14700.1) | INTRON |