Detailed information of SNP:
|
SNP ID:
sf0308006759(Gbrowse)
Chromosome: chr03 Position: 8006759 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.62% | 39.38% |
| All Indica | 797 | 91.59% | 8.41% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308006759 | A->G | LOC_Os03g14720(LOC_Os03g14720.1) | UTR_5_PRIME |