Detailed information of SNP:
|
SNP ID:
sf0308007340(Gbrowse)
Chromosome: chr03 Position: 8007340 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 96.90% | 3.10% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 472 | 91.95% | 8.05% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 98.11% | 1.89% |
| Tropical Japonica | 91 | 79.12% | 20.88% |
| Japonica Intermediate | 63 | 79.37% | 20.63% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308007340 | G->C | INTERGENIC | None |