Detailed information of SNP:
|
SNP ID:
sf0308025631(Gbrowse)
Chromosome: chr03 Position: 8025631 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.67% | 41.33% |
| All Indica | 798 | 28.95% | 71.05% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 30.40% | 69.60% |
| Indica II | 212 | 10.85% | 89.15% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308025631 | G->C | LOC_Os03g14760(LOC_Os03g14760.1) | Non-Synonymous SNP |