Detailed information of SNP:
|
SNP ID:
sf0308032316(Gbrowse)
Chromosome: chr03 Position: 8032316 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 54.69% | 45.31% |
| All Indica | 799 | 22.40% | 77.60% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 22.13% | 77.87% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 211 | 37.91% | 62.09% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308032316 | C->T | INTERGENIC | None |