Detailed information of SNP:
|
SNP ID:
sf0308055965(Gbrowse)
Chromosome: chr03 Position: 8055965 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 95.89% | 4.11% |
| All Indica | 724 | 94.20% | 5.80% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 338 | 95.27% | 4.73% |
| Indica II | 186 | 94.09% | 5.91% |
| Indica Intermediate | 200 | 92.50% | 7.50% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308055965 | C->A | INTERGENIC | None |