Detailed information of SNP:
|
SNP ID:
sf0308071682(Gbrowse)
Chromosome: chr03 Position: 8071682 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 96.92% | 3.08% |
| All Indica | 792 | 100.00% | 0.00% |
| All Japonica | 418 | 90.67% | 9.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 276 | 86.23% | 13.77% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 98.33% | 1.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308071682 | G->A | INTERGENIC | None |