Detailed information of SNP:
|
SNP ID:
sf0308146218(Gbrowse)
Chromosome: chr03 Position: 8146218 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 72.51% | 27.49% |
| All Indica | 792 | 94.95% | 5.05% |
| All Japonica | 495 | 33.33% | 66.67% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 333 | 27.33% | 72.67% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308146218 | T->C | INTERGENIC | None |