Detailed information of SNP:
|
SNP ID:
sf0308149166(Gbrowse)
Chromosome: chr03 Position: 8149166 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 88.50% | 11.50% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 68.55% | 31.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 74.03% | 25.97% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308149166 | T->C | INTERGENIC | None |