Detailed information of SNP:
|
SNP ID:
sf0308156279(Gbrowse)
Chromosome: chr03 Position: 8156279 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 73.43% | 26.57% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 36.02% | 63.98% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 30.15% | 69.85% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308156279 | T->C | INTERGENIC | None |