Detailed information of SNP:
|
SNP ID:
sf0308390210(Gbrowse)
Chromosome: chr03 Position: 8390210 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1346 | 98.66% | 1.34% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 426 | 96.01% | 3.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 289 | 94.46% | 5.54% |
| Tropical Japonica | 79 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 98.28% | 1.72% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308390210 | G->A | INTERGENIC | None |