Detailed information of SNP:
|
SNP ID:
sf0308447340(Gbrowse)
Chromosome: chr03 Position: 8447340 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 77.29% | 22.71% |
| All Indica | 746 | 71.45% | 28.55% |
| All Japonica | 491 | 99.59% | 0.41% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 353 | 86.12% | 13.88% |
| Indica II | 197 | 36.55% | 63.45% |
| Indica Intermediate | 196 | 80.10% | 19.90% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308447340 | C->T | INTERGENIC | None |